Commit a6a6bc7e authored by Maximilian Schanner's avatar Maximilian Schanner
Browse files

Rerun

parent 70834368
...@@ -18,7 +18,7 @@ ...@@ -18,7 +18,7 @@
"name": "stdout", "name": "stdout",
"output_type": "stream", "output_type": "stream",
"text": [ "text": [
"/home/arthus/Documents/CORBASS\n" "/local/arthus/CORBASS\n"
] ]
} }
], ],
...@@ -42,8 +42,7 @@ ...@@ -42,8 +42,7 @@
"name": "stderr", "name": "stderr",
"output_type": "stream", "output_type": "stream",
"text": [ "text": [
"\r", " 0% (1 of 15625) | | Elapsed Time: 0:00:00 ETA: 0:26:35"
"N/A% (0 of 15625) | | Elapsed Time: 0:00:00 ETA: --:--:--"
] ]
}, },
{ {
...@@ -58,34 +57,55 @@ ...@@ -58,34 +57,55 @@
"name": "stderr", "name": "stderr",
"output_type": "stream", "output_type": "stream",
"text": [ "text": [
" 0% (98 of 15625) | | Elapsed Time: 0:00:13 ETA: 0:39:48" "100% (15625 of 15625) |##################| Elapsed Time: 0:22:41 Time: 0:22:41\n",
"N/A% (0 of 3375) | | Elapsed Time: 0:00:00 ETA: --:--:--"
] ]
}, },
{ {
"ename": "KeyboardInterrupt", "name": "stdout",
"evalue": "", "output_type": "stream",
"output_type": "error", "text": [
"traceback": [ "Integrating 1450, this may take a while...\n"
"\u001b[0;31m---------------------------------------------------------------------------\u001b[0m", ]
"\u001b[0;31mOutOfDateError\u001b[0m Traceback (most recent call last)", },
"\u001b[0;32m~/Documents/CORBASS/run.py\u001b[0m in \u001b[0;36m<module>\u001b[0;34m\u001b[0m\n\u001b[1;32m 59\u001b[0m \u001b[0;32mif\u001b[0m \u001b[0mnewer\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mpar_file\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mexpl_fname\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m---> 60\u001b[0;31m \u001b[0;32mraise\u001b[0m \u001b[0mOutOfDateError\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 61\u001b[0m \u001b[0;31m# if there is no output or it is out of date, run explore and write the\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n", {
"\u001b[0;31mOutOfDateError\u001b[0m: ", "name": "stderr",
"\nDuring handling of the above exception, another exception occurred:\n", "output_type": "stream",
"\u001b[0;31mKeyboardInterrupt\u001b[0m Traceback (most recent call last)", "text": [
"\u001b[0;32m~/Documents/CORBASS/run.py\u001b[0m in \u001b[0;36m<module>\u001b[0;34m\u001b[0m\n\u001b[1;32m 64\u001b[0m \u001b[0mprint\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34mf\"\\nExploring {bin_name}, this may take a while...\"\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 65\u001b[0m rslt = explore(pars.bin_fname(bin_name), data, pars.n_ex, pars.bounds,\n\u001b[0;32m---> 66\u001b[0;31m r_ref=pars.r_ref)\n\u001b[0m\u001b[1;32m 67\u001b[0m \u001b[0mrslt\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mwrite\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 68\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n", "100% (3375 of 3375) |####################| Elapsed Time: 1:02:05 Time: 1:02:05\n",
"\u001b[0;32m~/Documents/CORBASS/corbass/exploration.py\u001b[0m in \u001b[0;36mexplore\u001b[0;34m(name, data, N, bounds, r_ref)\u001b[0m\n\u001b[1;32m 128\u001b[0m \u001b[0;31m# iterate\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 129\u001b[0m \u001b[0;32mfor\u001b[0m \u001b[0mlam\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0meps\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mrho\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mposterior\u001b[0m \u001b[0;32min\u001b[0m \u001b[0mit\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 130\u001b[0;31m \u001b[0mposterior\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0;34m...\u001b[0m\u001b[0;34m]\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0minv\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mlog_pst\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mr_ref\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mlam\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0meps\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mrho\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 131\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 132\u001b[0m \u001b[0mpbar\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mupdate\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mpbar\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mvalue\u001b[0m \u001b[0;34m+\u001b[0m \u001b[0;36m1\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n", "/local/arthus/CORBASS/corbass/evaluation.py:215: RuntimeWarning: covariance is not positive-semidefinite.\n",
"\u001b[0;32m~/Documents/CORBASS/corbass/inversion.py\u001b[0m in \u001b[0;36mlog_pst\u001b[0;34m(self, r_Ref, lamb, epsilon, rho, log_pri)\u001b[0m\n\u001b[1;32m 899\u001b[0m \u001b[0mThe\u001b[0m \u001b[0mlog\u001b[0m\u001b[0;34m-\u001b[0m\u001b[0mposterior\u001b[0m \u001b[0mvalue\u001b[0m \u001b[0;32mfor\u001b[0m \u001b[0mthe\u001b[0m \u001b[0mkernel\u001b[0m\u001b[0;34m-\u001b[0m\u001b[0mparameters\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 900\u001b[0m \"\"\"\n\u001b[0;32m--> 901\u001b[0;31m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_prep_calc\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mr_Ref\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mlamb\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mepsilon\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mrho\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 902\u001b[0m \u001b[0;32mreturn\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_log_pst\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mlamb\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mepsilon\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mrho\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mlog_pri\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0mlog_pri\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 903\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n", " for it in par_samps]\n",
"\u001b[0;32m~/Documents/CORBASS/corbass/inversion.py\u001b[0m in \u001b[0;36m_prep_calc\u001b[0;34m(self, r_Ref, lamb, epsilon, rho)\u001b[0m\n\u001b[1;32m 227\u001b[0m \u001b[0;31m# Invert covariance using Cholesky\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 228\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mL\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mnp\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mlinalg\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mcholesky\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mcov_NEZ_full\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 229\u001b[0;31m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mL_inv\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mnp\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mlinalg\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0minv\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mL\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 230\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 231\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mprc_NEZ_full\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mnp\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mdot\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mL_inv\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mT\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mL_inv\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n", " 0% (1 of 15625) | | Elapsed Time: 0:00:00 ETA: 0:28:57"
"\u001b[0;32m<__array_function__ internals>\u001b[0m in \u001b[0;36minv\u001b[0;34m(*args, **kwargs)\u001b[0m\n", ]
"\u001b[0;32m~/miniconda3/envs/CORBASS/lib/python3.7/site-packages/numpy/linalg/linalg.py\u001b[0m in \u001b[0;36minv\u001b[0;34m(a)\u001b[0m\n\u001b[1;32m 549\u001b[0m \u001b[0msignature\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0;34m'D->D'\u001b[0m \u001b[0;32mif\u001b[0m \u001b[0misComplexType\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mt\u001b[0m\u001b[0;34m)\u001b[0m \u001b[0;32melse\u001b[0m \u001b[0;34m'd->d'\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 550\u001b[0m \u001b[0mextobj\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mget_linalg_error_extobj\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0m_raise_linalgerror_singular\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 551\u001b[0;31m \u001b[0mainv\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0m_umath_linalg\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0minv\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0ma\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0msignature\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0msignature\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mextobj\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0mextobj\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 552\u001b[0m \u001b[0;32mreturn\u001b[0m \u001b[0mwrap\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mainv\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mastype\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mresult_t\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mcopy\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0;32mFalse\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 553\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n", },
"\u001b[0;31mKeyboardInterrupt\u001b[0m: " {
"name": "stdout",
"output_type": "stream",
"text": [
"\n",
"Exploring 1550, this may take a while...\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"100% (15625 of 15625) |##################| Elapsed Time: 0:29:14 Time: 0:29:14\n",
"N/A% (0 of 3375) | | Elapsed Time: 0:00:00 ETA: --:--:--"
] ]
}, },
{ {
"name": "stdout", "name": "stdout",
"output_type": "stream", "output_type": "stream",
"text": [ "text": [
"/home/arthus/Documents/CORBASS/out\n" "Integrating 1550, this may take a while...\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"100% (3375 of 3375) |####################| Elapsed Time: 1:08:58 Time: 1:08:58\n"
] ]
} }
], ],
...@@ -106,13 +126,10 @@ ...@@ -106,13 +126,10 @@
"metadata": {}, "metadata": {},
"outputs": [ "outputs": [
{ {
"name": "stderr", "name": "stdout",
"output_type": "stream", "output_type": "stream",
"text": [ "text": [
"\r", "/local/arthus/CORBASS/out\n"
" \r",
"\r",
" 0% (98 of 15625) | | Elapsed Time: 0:00:13 ETA: 0:45:52"
] ]
} }
], ],
...@@ -124,7 +141,18 @@ ...@@ -124,7 +141,18 @@
"cell_type": "code", "cell_type": "code",
"execution_count": 4, "execution_count": 4,
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"\u001b[0m\u001b[00mexample_1450_cmbfields.txt\u001b[0m \u001b[00mexample_1450_inte.npz\u001b[0m \u001b[00mexample_1550_fields.txt\u001b[0m\r\n",
"\u001b[00mexample_1450_coeffs.txt\u001b[0m \u001b[00mexample_1550_cmbfields.txt\u001b[0m \u001b[00mexample_1550_inte.npz\u001b[0m\r\n",
"\u001b[00mexample_1450_expl.npz\u001b[0m \u001b[00mexample_1550_coeffs.txt\u001b[0m\r\n",
"\u001b[00mexample_1450_fields.txt\u001b[0m \u001b[00mexample_1550_expl.npz\u001b[0m\r\n"
]
}
],
"source": [ "source": [
"ls" "ls"
] ]
......
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