Commits · ce772dc188eb5875c0653df03a0dd27a6220be1d · geomultisens / gms_preprocessing

25 Nov, 2020 3 commits

Fixed exception while closing AtmCorr.logger. · ce772dc1
Daniel Scheffler authored Nov 25, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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ce772dc1

Fixed issue ('struct.error: unpack requires a buffer of 4 bytes' within... · dbbed264

Daniel Scheffler authored Nov 25, 2020

Fixed issue #103 ('struct.error: unpack requires a buffer of 4 bytes' within SpatialIndexMediator in case of various parallel database accesses) by adding a database lock that blocks parallel database queries.
Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>

dbbed264

Fixed missing log messages regarding released locks. · 59570fdc
Daniel Scheffler authored Nov 25, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
```
59570fdc

23 Nov, 2020 2 commits
- Fixed that CFG.path_ECMWF_db was not overwritable by a user provided path. · 7c200e32
  Daniel Scheffler authored Nov 23, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  7c200e32
- Removed sklearn import in __init__.py as this does not seem to be needed after... · 2752e338
  Daniel Scheffler authored Nov 23, 2020
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Removed sklearn import in __init__.py as this does not seem to be needed after upgrading Ubuntu from 14.04 to 16.04.
Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
```
  2752e338
19 Nov, 2020 1 commit

Updated minimal version of py_tools_ds. This fixes an issue where... · 4f599328

Daniel Scheffler authored Nov 19, 2020

Updated minimal version of py_tools_ds. This fixes an issue where pixelToLatLon returned Lon/Lat instead of Lat/Lon.
Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>

4f599328

17 Nov, 2020 3 commits
- Fixed FutureWarning regarding the use of GeoDataFrame and GeoSeries for data... · 24f1486c
  Daniel Scheffler authored Nov 17, 2020
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Fixed FutureWarning regarding the use of GeoDataFrame and GeoSeries for data without geopandas geometry (switched to plain pandas classes).
Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  24f1486c
- Fixed error while dumping AC inputs (due to logger). · 6c93afa0
  Daniel Scheffler authored Nov 17, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  6c93afa0
- The clean-test rule no longer needs coverage as a requirement since this is a test requirement · 2e933e46
  Daniel Scheffler authored Nov 17, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  2e933e46
03 Nov, 2020 11 commits
- Bumped version to fix PyPI upload. · da9e1450
  Daniel Scheffler authored Nov 03, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  da9e1450
- Fixed linting. · 609105e4
  Daniel Scheffler authored Nov 03, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  609105e4
- Updated HISTORY.rst. · 52ecaae3
  Daniel Scheffler authored Nov 03, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  52ecaae3
- Adapted code to latest SICOR options files. Added minimal version of SICOR. · 222b4ba6
  Daniel Scheffler authored Nov 03, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  222b4ba6
- Deactivated sicor check within GMSEnvironment._check_nonpip_packages() as this... · 8e961042
  Daniel Scheffler authored Nov 03, 2020
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Deactivated sicor check within GMSEnvironment._check_nonpip_packages() as this is now installed via conda-forge.
Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
```
  8e961042
- Fixed DeprecationWarning (Using or importing the ABCs from 'collections'... · 27f51f5e
  Daniel Scheffler authored Nov 03, 2020
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Fixed DeprecationWarning (Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3, and in 3.9 it will stop working).
Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
```
  27f51f5e
- Added sklearn import in tests.__init__.py to avoid static TLS ImportError. · b940771c
  Daniel Scheffler authored Nov 03, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  b940771c
- Fixed linting in gms_preprocessing.__init__.py. · 734a14a1
  Daniel Scheffler authored Nov 03, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  734a14a1
- Replaced deprecated 'source activate' by 'conda activate'. · 59e71a95
  Daniel Scheffler authored Nov 03, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  59e71a95
- Added shebang to make run_gms.py executable. · 107ef6a4
  Daniel Scheffler authored Nov 03, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  107ef6a4
- Added conda badges to README.rst. · 13864f3d
  Daniel Scheffler authored Nov 03, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  13864f3d
14 Oct, 2020 1 commit

Use Redis class instead of deprecated StrictRedis. Clarify name discrepancy of... · 7fd177d8

Daniel Scheffler authored Oct 14, 2020

Use Redis class instead of deprecated StrictRedis. Clarify name discrepancy of redis between PyPI and conda-forge.
Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>

7fd177d8

13 Oct, 2020 17 commits
- Added setup, test, doc, lint and dev requirements. First working release on... · 4c1fd144
  Daniel Scheffler authored Oct 13, 2020
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Added setup, test, doc, lint and dev requirements. First working release on PyPI. Updated version info.
Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  4c1fd144
- Fixed README.rst that could not be rendered by PyPI. · 4d818029
  Daniel Scheffler authored Oct 13, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  4d818029
- Replaced relative link by absolute URL in README.rst to make the README.rst work on PyPI. · d691a43d
  Daniel Scheffler authored Oct 13, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  d691a43d
- Added History/Changelog section to README.rst. History is now not appended to... · 262e0d72
  Daniel Scheffler authored Oct 13, 2020
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Added History/Changelog section to README.rst. History is now not appended to the PyPI README file anymore.
Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  262e0d72
- Added PyPI deployment job and updated setup.py accordingly. Updated version info. · 6d18505a
  Daniel Scheffler authored Oct 13, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  6d18505a
- Merge branch 'enhancement/revise_docker_env' into 'master' · c54c93b5
  Daniel Scheffler authored Oct 13, 2020
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Enhancement/revise docker env

See merge request !11
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  c54c93b5
- Corrected version info. · d7f8936d
  Daniel Scheffler authored Oct 13, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  d7f8936d
- Merge branch 'master' into 'enhancement/revise_docker_env' · de8a1094
  Daniel Scheffler authored Oct 13, 2020
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# Conflicts:
#   HISTORY.rst
#   gms_preprocessing/version.py
```
  de8a1094
- Fixed broken CI. · 25f448cb
  Daniel Scheffler authored Oct 13, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  25f448cb
- Update HISTORY.rst. · f793cc86
  Daniel Scheffler authored Oct 13, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  f793cc86
- Allow some more version flexibility for scipy. · cfcf5df5
  Daniel Scheffler authored Oct 13, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  cfcf5df5
- Use conda to install scipy instead of pip. · a0c18973
  Daniel Scheffler authored Oct 13, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  a0c18973
- Fixed syntax. · 04e79cad
  Daniel Scheffler authored Oct 13, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  04e79cad
- Revised docker container setup files. · f2142724
  Daniel Scheffler authored Oct 13, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  f2142724
- Removed ecmwf-api-client installation as this is now included in SICOR. Pinned... · fb439c60
  Daniel Scheffler authored Oct 13, 2020
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Removed ecmwf-api-client installation as this is now included in SICOR. Pinned scipy to 1.1.0 in environment_gms_preprocessing.yml to make CI work for now.
Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
```
  fb439c60
- Use conda instead of pip to install scipy. · de8500c6
  Daniel Scheffler authored Oct 13, 2020
```
Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
```
  de8500c6
- Added missing requirement 'openpyxl'. Replaced deprecated 'source activate' by... · 4a772d28
  Daniel Scheffler authored Oct 13, 2020
```
Added missing requirement 'openpyxl'. Replaced deprecated 'source activate' by 'conda activate'. Pinned scipy to 1.1.0 in test_gms_preprocessing CI job to make CI work for now. Updated version info and HISTORY.rst.
Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
```
  4a772d28
12 Oct, 2020 1 commit

Use SPDX license identifier and set all files to GLP3+ to be consistent with... · 6ecc002b

Daniel Scheffler authored Oct 12, 2020

Use SPDX license identifier and set all files to GLP3+ to be consistent with license headers in the source files. Excluded tests from being installed via 'pip install'. Set development status to 'stable'. Updated version info.
Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>

6ecc002b

09 Oct, 2020 1 commit
- Fix quotes issue #2 · 0e0d716b
  Daniel Scheffler authored Oct 09, 2020
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Signed-off-by: Daniel Scheffler <danschef@gfz-potsdam.de>
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  0e0d716b