Commit e0de6a16 authored by Daniel Scheffler's avatar Daniel Scheffler
Browse files

Fixed CI setup.

parent d584de4a
Pipeline #3146 passed with stages
in 19 minutes and 36 seconds
......@@ -5,14 +5,16 @@ COPY *.yml /root/
# update the ci_env environment (that already contains all packages installed via 'docker_pyenvs' repo)
RUN /bin/bash -i -c "\
source /root/miniconda3/bin/activate ; \
source /root/miniconda3/bin/activate; \
source activate ci_env; \
conda env update -n ci_env -f /root/environment_gms_preprocessing.yml"
# copy sicor code to /tmp
COPY sicor /tmp/sicor
RUN bash -i -c "source /root/miniconda3/bin/activate gms_preprocessing; \
RUN bash -i -c "\
source /root/miniconda3/bin/activate; \
source activate ci_env; \
cd /tmp/sicor/ ; \
make clean ; \
make requirements ; \
......
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