CI Python environment is now separate from base env. Added defaults channels...

CI Python environment is now separate from base env. Added defaults channels below conda-forge in environment.yml

.gitlab-ci.yml

@@ -41,7 +41,7 @@ test_styles:
     - source /root/miniconda3/bin/activate
     - export GDAL_DATA=/root/miniconda3/share/gdal
     - export PYTHONPATH=$PYTHONPATH:/root  # /root <- directory needed later
-    - pip install "pycodestyle>=2.0.0,!=2.4.0"  # TODO remove as soon as docker runner is recreated
+#    - pip install "pycodestyle>=2.0.0,!=2.4.0"  # TODO remove as soon as docker runner is recreated
     - make lint
   artifacts:
     paths:
@@ -54,8 +54,8 @@ test_styles:
 test_geoarray_install:
   stage: test
   script:
-    - source /root/miniconda3/bin/activate
-    - export GDAL_DATA=/root/miniconda3/share/gdal
+    - source /root/miniconda3/bin/activate geoarray
+    - export GDAL_DATA=/root/miniconda3/envs/geoarray/share/gdal
     - conda create -y -q --name geoarray python=3
     - source activate geoarray
      # resolve some requirements with conda
@@ -107,7 +107,7 @@ deploy_pypi:
   dependencies:
     - test_geoarray
   script:   # Configure the PyPI credentials, then push the package, and cleanup the creds.
-    - source /root/miniconda3/bin/activate
+    - source /root/miniconda3/bin/activate geoarray
     - printf "[distutils]\nindex-servers =\n    pypi\n\n" >> ~/.pypirc
     - printf "[pypi]\n""repository:"" https://upload.pypi.org/legacy/\n" >> ~/.pypirc
     - printf "username= ${PYPI_USER}\n" >> ~/.pypirc

tests/CI_docker/context/environment_geoarray.yml

@@ -3,6 +3,7 @@ name: geoarray
 channels: &id1
   - http://conda.anaconda.org/ioam  # only for holoviews
   - http://conda.anaconda.org/conda-forge
+  - defaults
 
 dependencies:
   - python=3.*.*

tests/CI_docker/context/geoarray_ci.docker

@@ -5,4 +5,4 @@ COPY *.yml /root/
 
 RUN /bin/bash -i -c "\
     source /root/miniconda3/bin/activate ; \
-    conda env update -n root -f /root/environment_geoarray.yml"
+    conda env update -n /root/environment_geoarray.yml"