diff --git a/CITATION b/CITATION
index 75ffa97e2ae57eeaa4b9209ddd3aae8762ca9f52..4c51de441bdcb9aa222855180a848eb40344a55e 100644
--- a/CITATION
+++ b/CITATION
@@ -14,8 +14,8 @@ Here are the BibTex entries for LaTeX users:
 @misc{LYNXApp,
   author = {Jacquey, Antoine B. and Cacace, Mauro},
   title = {{LYNX: Lithosphere dYnamic Numerical toolboX, a MOOSE-based application}},
-  month = jul,
-  year = 2019,
+  month = {jul},
+  year = {2019},
   doi = {10.5281/zenodo.3355376},
   url = {https://doi.org/10.5281/zenodo.3355376}
 }
\ No newline at end of file
diff --git a/doc/content/application_development/damage_rheology.md b/doc/content/application_development/damage_rheology.md
index 11451b98a7324f487c608e2909e191a4477f3900..08fcf04778f71d53705c543bc8cbc38bb5dae1c2 100644
--- a/doc/content/application_development/damage_rheology.md
+++ b/doc/content/application_development/damage_rheology.md
@@ -4,7 +4,7 @@ Here we describe the base for the damage rheology implementation in LYNX.
 
 ## Stress update
 
-We rely of the elastic energy and stress formulation of [cite:lyakhovsky1997]:
+We rely of the elastic energy and stress formulation of [!cite](lyakhovsky1997):
 
 \begin{equation}
   \sigma_{ij} = \left(\lambda - \frac{\alpha \gamma}{\xi}\right) \varepsilon_{kk} \delta_{ij} + \left(2G - \alpha \gamma \left(\xi - 2\xi_{0}\right)\right) \varepsilon_{ij}.
@@ -47,7 +47,7 @@ The parameter $\xi_{0}$ represents the modified internal friction of the materia
 
 ## Inelastic model
 
-In LYNX, we rely on a different formulation as the one presented in [cite:lyakhovsky1997,lyakhovsky2015] for the inelastic update. The yield function presented in [cite:lyakhovsky2015] reads:
+In LYNX, we rely on a different formulation as the one presented in [!cite](lyakhovsky1997,lyakhovsky2015) for the inelastic update. The yield function presented in [!cite](lyakhovsky2015) reads:
 
 \begin{equation}
   f = D\varepsilon_{v}^{3} + {\lVert \varepsilon_{ij} \rVert}^{2} \left(\xi - \xi_{0}\right)
diff --git a/doc/content/application_development/identities.md b/doc/content/application_development/identities.md
index 9ca043f4398a746a53a62d3bc204806ffa5c2a4c..bd360e7d50c22dab1f3404c9e18ed9e7f76eb132 100644
--- a/doc/content/application_development/identities.md
+++ b/doc/content/application_development/identities.md
@@ -1,6 +1,6 @@
 ## Some identities
 
-In the following description, we make use of the following identities extended from [cite:dunne2005].
+In the following description, we make use of the following identities extended from [!cite](dunne2005).
 
 Stress invariants:
 
diff --git a/doc/content/application_development/plasticity.md b/doc/content/application_development/plasticity.md
index e87b66a0bcbbfeaefcbe825fc65c5cdd982ba729..2b08b36f716fa3501f9f1bba6d28de0df016d06a 100644
--- a/doc/content/application_development/plasticity.md
+++ b/doc/content/application_development/plasticity.md
@@ -51,7 +51,7 @@ Using Eq. 3, the plastic increment can be written:
 
 ## Tangent operator modulus
 
-Here we extend the tangent operator modulus given in [cite:dunne2005] to account for volumetric deformation and non-associative models.
+Here we extend the tangent operator modulus given in [!cite](dunne2005) to account for volumetric deformation and non-associative models.
 The tangent operator modulus is defined as:
 
 \begin{equation}
diff --git a/doc/content/documentation.menu.md b/doc/content/documentation.menu.md
index 61fdb0afbff7f7399edaf59dc15d2d33f2685570..4bd5456beecdd4da2cbb993c9b945ed768fb7903 100644
--- a/doc/content/documentation.menu.md
+++ b/doc/content/documentation.menu.md
@@ -7,6 +7,10 @@
 
 !col! class=s12 m6 l4
 ## [Application Development](application_development/index.md)
+
+- [Plasticity](application_development/plasticity.md)
+- [Viscoplasticity](application_development/viscoplasticity.md)
+- [Damage rheology](application_development/damage_rheology.md)
 !col-end!
 
 !col! class=s12 m6 l4
diff --git a/doc/content/examples/index.md b/doc/content/examples/index.md
index 5b63c734f042e965ada8d73fb5ce0e99e731c5c7..c1375f78370a7fcd038a49123790e1a335dcce48 100644
--- a/doc/content/examples/index.md
+++ b/doc/content/examples/index.md
@@ -1,7 +1,3 @@
 # Examples
 
-- [Frequently Asked Questions](help/faq.md)
-- [Troubleshooting](help/troubleshooting.md)
-- [Developer Tools](help/development/index.md)
-- [GFZ Linux cluster usage](help/glicconnectivity.md)
-- [Contact Us](help/contact_us.md)
+Here we will put some examples